Presentations

Invited Presentations

  1. “Model-based Engineering of Metabolism”, ASBMB Special Symposia on Chemical, Synthetic  and Systems Biology: New Directions of Biochemistry, Snowbird, UT, October  15th 2011.
  2. “Dynamic  Genome-scale Modeling of Microbial Communities”, Institute for Computing  in Science (ICiS) Workshop on Genomics Driving Modeling in Biology, Park City, UT, July 28th 2011.
  3. “Model-based  Analysis and Design of Metabolism for Biofuels and Biochemicals”,   Complexity and Systems Biology of Microbial Biofuels Workshop, University    of Warwick, Coventry, UK, June 24th 2011.
  4. “Integrated  Modeling of Microbial Ecology in Subsurface Environments”, Pacific   Northwest National Laboratory, Richland, WA, May 12th 2011. (Received Outstanding Lecturer Award)
  5.  “Rational Bioprocess Design”, Department  of Chemical Engineering, Queens University, Kingston, ON, January 26th,  2011.
  6. “Model-based Metabolic Engineering”, Department of Chemical Engineering, University of Pittsburgh, PA, December 1st, 2010.
  7.  “Constraint-based Modeling”, SRI Pathway Tools Workshop, Palo Alto, CA, October 27th, 2010.
  8.  “Systems Biology based Approaches for Characterizing Metabolic Response to Perturbations”, Biogen Idec Inc., San Diego, CA, August 26th, 2010.
  9. “Rational Approaches to Improve Bioprocess Productivity”, Society of Industrial Microbiology Annual Meeting, San Francisco, CA, August 4th, 2010.
  10. “Integrated Modeling of Environmental Processes using Dynamic Genome Based Models”, US Department of Energy’s Genomic Sciences Workshop, Bethesda, MD, February 8th, 2010.
  11. “Interfacing Mathematical Models with Metabolic Data”, Society of Industrial Microbiology Annual Meeting, Toronto, Canada, July 28th, 2009.
  12. “Metabolic Modeling and Optimization of Environmentally Relevant Microbial Species”, Department of Applied Mathematics, Indian Institute of Science, Bangalore, India, May 6th, 2009.
  13. “Constraint-based Modeling and its Applications to Bioprocess Scheduling”, Honeywell Technology Solutions Laboratory, Bangalore, India, May 6th, 2009.
  14. “Linking Genome-scale Metabolic Models to Reactive Transport Models for Simulation of Uranium Bioremediation”, US Department of Energy’s Environmental Remediation Sciences Workshop, Leesburg, VA, April 21st, 2009.
  15. “Systems Biology Applications for Environmental Biotechnology Applications”, Department of Chemical and Physical Sciences, University of Toronto, Mississauga, ON, April 7th, 2009.
  16. “Genome-based Metabolic Modeling of Growth Competition”, Department of Applied Mathematics, University of Waterloo, Ontario, ON, August 22nd, 2008.
  17. “Physiological and Metabolic Insights based on Genome-scale Modeling of Geobacter sulfurreducens Metabolism”, Lawrence Berkeley National Laboratory, Berkeley, CA, July 10th, 2008.
  18. “Novel Methods for Metabolic Engineering” Amyris Biotechnologies, Emeryville, CA, July 7th, 2008.
  19. “Metabolic Modeling” In Systems and Network Biology Session of Canadian Bioinformatics Workshops, Toronto, ON, June 27th, 2008.
  20. “Metabolic Modeling of Growth Competition in Microbial Communities”, Genome Biology and Bioinformatics Regional Workshop, Toronto, ON, May 14th, 2008.
  21. “Use of Large-scale Phenotyping Data for Refining Genome-scale Metabolic Models”, Second Conference on Phenotype Micro-arrays, Florence, Italy, March 19th, 2008. (Presented by L. Yang)
  22.  “Systems Biology: Relevance to Ecology, Evolution, Physiology and Of Course, Metabolic Engineering”, Department of Biology, Concordia University, Montreal, September 28th, 2007.
  23. “Model-based Analysis of Metabolic Redundancy in Bacteria”, Department of Cell and Systems Biology, University of Toronto, April, 20th, 2007.
  24. “Model-based Analysis and Design of Bacterial Metabolism”, Department of Chemical Engineering, McMaster University, April 5th, 2007.
  25.  “Metabolic Modeling and Engineering for Production of Value-Added Chemicals from Mixed Sugars”. OCVCI-PAPRICAN Forest-Based Chemicals Biorefinery Workshop. March, 15th, 2007.
  26. “Hybrid-Modeling of metabolism of Geobacteraceae in sediments”, Department of Microbiology, University of Massachusetts, Amherst, October, 24th, 2006.
  27. “Model-based analysis of metabolic redundancy and interactions in bacteria”, Biotechnology Institute, University of Minnesota, September, 28th, 2006.
  28. “Integrating Phenotypic and Expression Data to Characterize Metabolism in Geobacter sulfurreducens”, Terrence Donnelly Center for Biomedical Research, University of Toronto, Toronto, May 2005.
  29. “Metabolic modeling of G. sulfurreducens”, Pacific Northwest National Laboratory, Richland, WA, September 2004.
  30. “Constraint based Modeling: Issues and Applications”, Center for Control Engineering and Computation. University of California, Santa Barbara, CA, August, 2003.
  31. “Nonlinear Optimization for Control and Analysis of Bioprocesses”, Department of Chemical Engineering, Indian Institute of Technology, Madras, India, April, 2002.
  32. “Flatness based approach to control of bioreactors”, DuPont Technology Exchange Forum, DuPont Experimental Station, Wilmington, DE, March 2001.

Conferences

  1. Laurence Yang, William R. Cluett, R. Mahadevan. “Genome-scale robust strain design,” Poster presentation at Biochemical and Molecular Engineering XVII, Seattle, Washington, June 26-30, 2011.
  2.  N. Bourdakos, R. Mahadevan. “Defined Consortia for the Degradation of Complex Wastes in Microbial Fuel Cells.” Poster at 3rd International Microbial Fuel Cell Conference 2011, Wetsus Centre of Excellence for Sustainable Water Technology, Leeuwarden, the Netherlands, June 6-8th, 2011.
  3.  V. E. Balderas-Hernandez, J. Usher, K. Baetz, S. Gleddie, A. Johnston, L. Harris, R. Mahadevan. “Ethanol Production By A Xylose Fermenting Saccharomyces cerevisiae Using Wheat Straw Hydrolysate”, Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  4.  Kai Zhuang, G. Vemuri, R. Mahadevan. “Economics of Membrane Occupancy and the Respiro-fermentation”. Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  5.  Kai Zhuang, E. Ma, R. Mahadevan. “Dynamic community modelling of uranium bioremediation.” Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  6.  Jiao Zhao, K. Zhuang, E. Ma, H. Richter, M. Barlett, Y. Fang, R. Mahadevan, T. Scheibe, and D. Lovley. “Detailed Modeling of Subsurface Microbes and Interaction between Microbial and Hydrogeochemical Process for Sustained Uranium Removal.” Poster at the US DoE SBR PI Annual Meeting, Washington DC, April 26-28th 2011.
  7.  Kai Zhuang, M. Barlett, E. Ma, D. Lovley, R. Mahadevan. ” Modeling Community Metabolism during Uranium Bioremediation.” Poster at the US DoE SBR PI Annual Meeting, Washington DC, April 26-28th 2011.
  8.  Laurence Yang, William R. Cluett, R. Mahadevan. “Efficient Redesign of Metabolism for Biochemicals,” Oral presentation at the 2011 IBE Annual Conference, Atlanta, Georgia, March 3-5, 2011.
  9.  Kai Zhuang, E. Ma, R. Mahadevan. “Dynamic community modelling of uranium bioremediation.” Oral Presentation at the AIChE Annual Meeting, Salt Lake City, 2010.
  10. Kai Zhuang, G. Vemuri, R. Mahadevan. “Economics of Membrane Occupancy and the Respiro-fermentation”. Oral Presentation at the AIChE Annual Meeting, Salt Lake City, 2010.
  11. L. Yang (poster), W. R. Cluett, R. Mahadevan. “Scalable and Highly Efficient Computational Algorithm for Metabolic Engineering,” Metabolic Engineering VIII, Jeju Island, South Korea, June 14th, 2010.
  12. P. Gawand  (poster), P. Hyland, R. Mahadevan, “Metabolic Engineering Strategies for Substrate Co-utilization in E. coli”, Metabolic Engineering Conference VIII, Jeju Island, South Korea, June 13th, 2010 (Selected as the Biotechnology and Bioengineering Best Poster Award).
  13. A. V. Pandit (poster), R. Mahadevan, “Electrical Enhancement of E. coli for Succinate Production”,  12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June  3rd, 2010.
  14. F. Salimi (poster), K. Zhuang, R. Mahadevan, “Genome-Scale Characterization of Metabolic Potential of Solventogenic and Cellulolytic Clostridia”, 12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June 3rd , 2010.
  15. N. Bourdakos (poster), R. Mahadevan. “Defined Consortia for the Degradation of Complex Wastes in Microbial Fuel Cells”, 12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June 3rd , 2010.
  16. P.Y. Li (poster), R. Mahadevan, “PichCyc: An Extensible Database for Model Based Analysis of P. stipitis Metabolism”, 12th Canadian Society for Chemical Engineering Ontario Quebec Biotechnology Meeting, Montreal, Canada, June 3rd, 2010.
  17. F. Salimi (poster), K. Zhuang, R. Mahadevan, “Genome-Scale Characterization of Metabolic Potential of Solventogenic and Cellulolytic Clostridia“, 110th American Society of Microbiology Annual General Meeting, San Diego, USA. May 26th, 2010.
  18. J. Zhao, Y. Fang, T. Scheibe, D. Lovley, R. Mahadevan (poster), “Systematic Investigation of Critical Parameters Involved in a Geobacter-mediated Bioremediation Model by Global Sensitivity Analysis”, 110th General Meeting of the American Society for Microbiology, San Diego, USA, May 26th, 2010.
  19. N. Jayasinghe (poster), D. Lovley, A. Franks, R. Mahadevan, “Metabolic Modeling of Spatial Heterogeneities of Biofilms in Microbial Fuel Cells”, 110th General Meeting of the American Society for Microbiology, San Diego, USA, May 25th, 2010.
  20. J. Zhao(speaker), S. Garg, K. Zhuang, R. Mahadevan, Y. Fang, T. Scheibe, D. Lovley, “BUGS Modeling: Integrating Dynamic Genome-Based Metabolic Models with Reactive Transport Models to Predict the Fate of Contaminants in the Subsurface”, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, March, 2010.
  21. K. Zhuang, J. Zhao, N. Jayasinghe, J. Sun, T. Hoon, C. Risso, D. Lovley, R. Mahadevan (speaker), “Dynamic Genome-based Models for Simulating Microbial Ecology”, US Department of Energy’s Genomic Sciences Workshop, February 8th, 2010, Bethesda, MD.
  22. N. Anesiadis (speaker), W.R. Cluett, R. Mahadevan, “Sensitivity Analysis of a Dynamic Genetic Controller for Metabolic Engineering”, Society of Industrial Microbiology Annual Meeting, Toronto, Canada, July 28th, 2009.
  23. A. Islam (speaker), E. Edwards, R. Mahadevan, “A Genome-scale Global Metabolic Model of Dehalococcoides Species”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  24. C. Risso (speaker), J. Sun, K. Zhuang, R. Mahadevan, O. Bui, R. DeBoy, W. Ismael, C. H. Schilling, B. A. Methe, and  D. R. Lovley, “Unraveling the Physiology of Rhodoferax ferrireducens with In silico Modeling”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  25. S. Garg (speaker), T. Scheibe, Y. Fang, D. Lovley, and R. Mahadevan, “Coupling a Genome-Scale Metabolic Model with a Reactive Transport Model to Describe in situ Uranium Bioremediation”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  26. J, Zhao (speaker), T Scheibe, Y. Fang, D. Lovley, and  R. Mahadevan “Characterization of Geobacter-Mediated Bioremediation by Modeling Electron Capacitance”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  27. M. Izallalen (speaker), S. M. FitzPatrick, J. Nguyen, R. Mahadevan, K. P. Nevin, J. Sun, and D. R. Lovley, “Engineering Geobacter sulfurreducens to Convert Glycerol to Electricity”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  28. Y. Qu, R. M. Adkins, R. Mahadevan, D. R. Lovley, and J. Krushkal (speaker), “Computational Pipeline for Analyses of Variation in Regulatory Organization among Phylogenetically Closely Related Microorganisms”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  29. K. Zhuang, D. Lovley, and R. Mahadevan (speaker), “Dynamic Modeling of a Microbial Community of Desulfovibrio vulgaris, Geobacter sulfurreducens and Acetate-oxidizing Sulfate-reducing Bacteria Related to Uranium Bioremediation”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  30. J. Zhao, S. Garg, K. Zhuang, R. Mahadevan (speaker), Y. Fang, T. Scheibe, D. Lovley, “Coupling In Silico Microbial Community Models with Reactive Transport Models to Predict the Fate of Contaminants in the Subsurface”, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, April, 2009.
  31. K. Zhuang, R. Mahadevan, J. Sun, Y. Fang, T. Scheibe, C. Risso, H. Richter, and D. Lovley, Dynamic Genome-scale Modeling of Geobacter species in Subsurface Environments, Poster at the DoE GtL Annual Workshop, Washington DC, February, 2009.
  32. Zhao, J (Speaker), Fang, Y, Scheibe, TD, Lovley, DR and Mahadevan, R. “Effect of Electron Capacitance on Geobacter Growth and Metal Reduction in Subsurface”, Poster at the American Geophysical Union, Fall Meeting 2008, San Francisco, CA, December 2008.
  33. K. Zhuang (speaker), D. Lovley, R. Mahadevan, “Dynamic Modeling of Community Competition in Uranium Contaminated Sub-surface Environments”, Oral Presentation at the AIChE Annual Meeting, Philadelphia, November, 2008.
  34. L. Yang (speaker), W. R. Cluett, R. Mahadevan, “Investigating Metabolite Turnover Rates using Constraint-based Models of Metabolism”, Poster Presentation at the AIChE Annual Meeting, Philadelphia, November, 2008.
  35. A. Islam (speaker), E. Edwards, R. Mahadevan, “Genome-scale Constraint-based Modeling of Dehalococcoides species for Reductive Dechlorination”, Oral Presentation at the CsChE Annual Meeting, Ottawa, October, 2008.
  36. N. Anesiadis (speaker). W. R. Cluett, R. Mahadevan, “Dynamic Control of Gene Expression for Succinate Overproduction”,Oral Presentation at the CsChE Annual Meeting, Ottawa, October, 2008.
  37. K. Zhuang, M. Izallalen, D. R. Lovley (speaker), R. Mahadevan, “Dynamic Multi-species Metabolic Modeling for Analyzing Microbial Community Function  during In situ Uranium Remediation”, Poster Presentation at the International Society of Microbial Ecology Conference, Cairns, Australia, August, 2008.
  38. Y. Fang, S. Garg,  D Lovley, R Mahadevan, T. Scheibe,  (speaker), “Integrated Model of Hydrology, Geochemistry, and Metabolism for Optimizing Bioremediation in Sub-surface Environments”, Oral Presentation at the Pacific AGU Meeting Cairns, Australia, August, 2008.
  39. S. Garg, Y. Fang, T. Scheibe, D Lovley, R Mahadevan (speaker), “Integrated Model of Hydrology, Geochemistry, and Metabolism for Optimizing Bioremediation in Sub-surface Environments”, Oral Presentation at the Computational Methods in Water Resources Conference, San Francisco, July 2008.
  40. K. Srinivasan (speaker), D. Lovley, R. Mahadevan, “Model-Based Analysis of Proton Production and Consumption during Growth of Geobacter Species and Escherichia coli”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  41. B. Sayyar (speaker), D. Lovley, R. Mahadevan, “Thermodynamic Electron Equivalent Models of Geobacter Species”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  42. A. Islam, E. Edwards, R. Mahadevan (speaker), “Genome-Scale in Silico Metabolic Modeling of Dehalococcoides sp. Strain CBDB1”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  43. J. Sun (speaker), B. Sayyar, K. Srinivasan, D. Lovley, R. Mahadevan, “Genome-Scale Constraint-Based Modeling of Geobacter metallireducens”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  44. L. Yang (speaker), W. R. Cluett and R. Mahadevan, Fitness Profiles based Identification of Enzyme Capacities in E. coli, Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  45. K. Srinivasan (speaker), D. Lovley, R. Mahadevan, “Model-Based Analysis of Proton Production and Consumption during Growth of Geobacter Species and Escherichia coli”, Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  46. A. Islam, E. Edwards, R. Mahadevan (speaker), “Genome-Scale in Silico Metabolic Modeling of Dehalococcoides sp. Strain CBDB1, Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  47. S. Garg, K. Zhuang, R. Mahadevan (speaker), Y. Fang, T. Scheibe, D. Lovley, Coupling In Silico Microbial Models with Reactive Transport Models to  Predict the Fate of Contaminants in the Subsurface, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, April, 2008.
  48. J. Sun (speaker), K. Zhuang, K. Srinivasan, R. Mahadevan, O. Bui, T. Fahland, I. Famili, M. Izallalen, C. Risso, S. Haveman, C. Schilling, and D. Lovley, Computational modeling of central metabolism of Geobacter and related species, Poster at the DoE GtL Annual Workshop, Washington DC, February, 2008.
  49. L. Yang (speaker), W. R. Cluett and R. Mahadevan, Fitness Profiles Identify Enzyme Capacities, Poster at the International Conference on Systems Biology, Long Beach, CA, October, 2007.
  50. K. Zhuang (speaker), M. Izallalen, D. R. Lovley, R. Mahadevan, Race to Domination: A community competition study of Escherichia coli, Geobacter sulfurreducens, and Rhodoferax ferrireducens, Poster at the International Conference on Systems Biology, Long Beach, CA, October, 2007.
  51. L. Yang (speaker), W. R. Cluett and R. Mahadevan, “A Bilevel Optimization Algorithm to Identify Enzymatic Capacity Constraints in Metabolic Networks”, Biochemical Engineering Conference XV, Quebec City, QC, July 2007.
  52. N. Anesiadis (speaker), W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, Genome Biology and Bioinformatics Regional Workshop, ON, June 2007.
  53. K. Zhuang (speaker), M. Izallalen, D. R. Lovley, R. Mahadevan, Dynamic Modeling of a Glucose oxidizing, Fe(III) reducing coculture of Geobacter sulfurreducens and Escherichia coli. Oral Presentation at the CsChE Annual  Ontario-Quebec Biotechnology Meeting, Toronto, ON, June 2007.
  54. B. Sayyar (speaker), K. Srinivasan, R. Mahadevan, Analysis of the energetics of G. metallireducens, Poster at the CsChE Annual  Ontario-Quebec Biotechnology Meeting, Toronto, ON, June 2007
  55. K. Zhuang (speaker), M. Izallalen, D. R. Lovley, R. Mahadevan, Dynamic Modeling of a Glucose oxidizing, Fe(III) reducing coculture of Geobacter sulfurreducens and Escherichia coli. Poster at the ASM Annual Meeting, Toronto, ON, May 2007.
  56. R. Mahadevan (speaker), and D. R. Lovley, Analysis of Degree of Genetic Redundancy in Prokaryotic Metabolic Networks. Poster at the ASM Annual Meeting, Toronto, ON, May 2007.
  57. N. Anesiadis (speaker), W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, ASM Conference on Integrating Metabolism and Genomics (IMAGE), Montreal, May, 2007.
  58. N. Anesiadis (speaker), W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, Statistics and Control Meeting, McMaster University, Hamilton, Ontario, May, 2007.
  59. R. Mahadevan (speaker), and D. R. Lovley, Analysis of Genetic Redundancy in Bacterial Metabolic Networks. DoE Genomics:GtL Conference, Washington D.C., February, 2007
  60. R. Mahadevan (speaker), D. Segura, and D. R. Lovley, “Analysis of Redundancy in Central Metabolism of G. sulfurreducens”, AIChE Annual Meeting, San Francisco, November 2006.
  61. M. A. Henson (speaker), J. Hjersted and R. Mahadevan, “Dynamic Flux Balance Analysis of Yeast Primary Metabolism in Fed-Batch Culture”, AIChE Annual Meeting, San Francisco, November 2006.
  62. R. Mahadevan (speaker), M Izallalen, and D Lovley, In Silico Analysis of Metabolic Interactions in a Fe(III) Reducing/Electricity Generating Microbial Community in Gordon Research Conference on Metabolic Ecology, Lewiston ME, July, 2006.
  63. R. Mahadevan (speaker), M. Coppi, D. Segura, S Van Dien, B Palsson, C Schilling, A Esteve-Nunez, M Izallalen, and D Lovley, In Silico Modeling of the Growth and Physiological Responses of Geobacteraceae in Complex Environments. DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  64. R. Mahadevan (speaker), T. Fahland, Y. Kwan, J.D. Trawick, I. Famili, and C.H. Schilling, Integrated Computational and Experimental Approaches to Facilitated Model Development. DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  65. R. Mahadevan (speaker), M. Coppi, D. Segura, S Van Dien, B Palsson, C Schilling, A Esteve-Nunez, M Izallalen, and D Lovley, In Silico Modeling of the Growth and Physiological Responses of Geobacteraceae in Complex Environments. DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  66. J. Krushkal, M. Puljic, R. M. Adkins, J. Peeples, B. Yan, R. Mahadevan, and D. R. Lovley, Computational Approaches to Investigating Transcription Regulatory Networks and Molecular Evolution of the Metal-Reducing Family Geobacteraceae. . DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  67. M. A. Henson (speaker), J. Hjersted and R. Mahadevan, “Dynamic Flux Balance Analysis of Yeast Primary Metabolism in Fed-Batch Culture”, AIChE Annual Meeting, Cincinnati, November 2005.
  68. R. Vadigepalli (speaker), and R. Mahadevan, “A Multi-cellular Dynamic Model of Neuron-Astrocyte Metabolic Interactions in the Brain”, AIChE Annual Meeting, Cincinnati, November 2005.
  69. R. Mahadevan (speaker), M. Izallalen, C. H. Schilling, A. P. Burgard, and D.R. Lovley “Engineering Geobacter Metabolism for Enhanced Electricity Generation”, AIChE Annual Meeting, Cincinnati, November 2005.
  70. R. Mahadevan(speaker), B. Yan, J. Krushkal, and D. R. Lovley,, “Reconstruction of the Regulatory Network of Geobacter sulfurreducens from Gene Expression Data and Sequence Analysis”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  71. R. Mahadevan, D. Segura (speaker), and D. R. Lovley, “Integrated Analysis of Integrated analysis of central metabolism mutants in Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  72. M. Izallalen (speaker), R. Mahadevan, C.H. Schilling and D. R. Lovley, “Engineering Geobacter metabolism for augmentation of electron transfer rate”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  73. R. Mahadevan (speaker), B. Yan, J. Krushkal, D. Segura, D. R. Lovley, and C. H. Schilling, “Integrating Phenotypic and Expression Data to Characterize Metabolism in Geobacter sulfurreducens”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2005.
  74. R. Mahadevan (speaker), D. R. Lovley, D. Bond and C. H. Schilling, “Model-driven Discovery of Novel Biological Mechanisms in the Metabolism of Geobacter sulfurreducens”, AIChE Annual Meeting, Austin, November 2004.
  75. K.G. Gadkar (speaker), R. Mahadevan, F. J. Doyle III, and J. S. Edwards, “Estimating Optimal Induction Times of Genetic Alterations using Constraint-based Models”, AIChE Annual Meeting, Austin, November 2004.
  76. R. Mahadevan (speaker), D. R. Bond, J. E. Butler, M. V. Coppi, A. Esteve-Nuñez, D. R. Lovley, and C. H. Schilling, “Model-driven Discovery of Novel Biological Mechanisms in the Metabolism of Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Washington, DC, May 2004.
  77. K.G. Gadkar (speaker), R. Mahadevan, F. J. Doyle III, and J. S. Edwards, “Estimating Optimal Induction Times of Genetic Alterations using Constraint-based Models”, Poster at International Conference on Systems Biology, St. Louis, MO, November 2003.
  78. R. Mahadevan (speaker), B. O. Palsson, and C. H. Schilling, “Effects of Alternate Optimal Solutions in Constraint-based Genome Scale Metabolic Models”, AIChE Annual Meeting, San Francisco, November 2003.
  79. R. Mahadevan (speaker), D. R. Bond, J. E. Butler, A. Esteve-Nuñez, D. R. Lovley, and C. H. Schilling, “Genome scale Metabolic Model of Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Washington, DC, May 2003.
  80. C. Nuñez (speaker), B. Methe, A. Esteve-Nuñez, C. S. Giometti, R. Mahadevan, C. H. Schilling, and D.R. Lovley. “Functional Genomics and Proteomics Analysis: Defining the RpoS Regulon in Geobacter sulfurreducens”,Poster at the ASM Annual Meeting, Washington, DC, May 2003.
  81. C. H. Schilling (speaker), R. Mahadevan, S. Park, E. Travnik, B. Palsson, C. Maranas, D. Lovley, and D. Bond, “SimPheny: A Computational Infrastructure Bringing Genomes to Life”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2003.
  82. D. Lovley (speaker), M. Coppi, D. Bond, J. Butler, S. Childers, T. Mehta, C. Leang, B. Methe, C. Giometti, R. Mahadevan, C.H. Schilling, B. Palsson, “Microbial Cell Model of G. sulfurreducens: Integration of in silico Models and Functional Genomic Studies”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2003.
  83. R. Mahadevan, J. S. Edwards (speaker) and F. J. Doyle III, Dynamic Flux Analysis of Diauxic Growth in Escherichia coli, AIChE Annual Meeting, Indianapolis, IN, November 2002.
  84. R. Mahadevan (speaker) and F. J. Doyle III, Optimization of a Fed-batch Bioreactor based on State Transformations”, AIChE Annual Meeting, Reno, NV, November 2001.
  85. R. Mahadevan (speaker) and F. J. Doyle III, Control Education by Coupling Software and Laboratory Experiments”, AIChE Annual Meeting, Reno, NV, November 2001.
  86. R. Mahadevan (speaker), J. S. Edwards and F. J. Doyle III, “Dynamic Flux Balance Analysis for Metabolic Modeling”, Poster at International Conference on Systems Biology, Pasadena, CA, November 2001.
  87. R. Mahadevan (speaker), J. S. Edwards and F. J. Doyle III, “Dynamic Flux Analysis of Diauxic Growth in E. coli”, Biomedical Engineering Society Annual Meeting, Durham, NC, October 2001.
  88. R. Mahadevan (speaker) and F. J. Doyle III, “A Flatness based Approach to On-line Optimization of Fed-batch Bioreactors”, AIChE Annual Meeting, Los Angeles, CA, November 2000.
  89. R. Mahadevan, A. Allcock, and F. J. Doyle III (speaker), “Control-Relevant Scheduling of Grade Transitions in Polymerization Reactor”, AIChE Annual Meeting, Los Angeles, CA, November 2000.
  90. R. Mahadevan (speaker), E. P. Gatzke, and F. J. Doyle III, “Advanced Control Education through the Integration of Laboratory Experiments and Simulation”, AIChE Annual Meeting, Los Angeles, CA, November 2000.
  91. R. Mahadevan (speaker), R. Vadigepalli and F. J. Doyle III, “Integrating Experiments with Theory in Control Education with the Four-tank Process” Poster at the IFAC Symposium on Advanced Control of Chemical Processes, Pisa, Italy, June 2000.
  92. R. Mahadevan (speaker) and F. J. Doyle III, “Optimization and Control of Bioreactors”, Poster at MABEC Annual Meeting, Newark, DE, April 2000.
  93. R. Mahadevan, E. P. Gatzke (speaker), and F. J. Doyle III, “Merging Laboratory Experiments with Software Experiments”, AIChE Annual Meeting, Dallas, November 1999.

*: Corresponding Author